Dev #13

renewiegandt · 2018-12-19T11:50:33Z

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…2018 into dev

Dev

master to dev

Dev

…JLU2018

merge master to dev

JannikHamp and others added 30 commits November 20, 2018 15:28

Add files via upload

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Add files via upload

a9d0070

Update README.md

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Update README.md

6fd9948

update, working with unmerged motif files now

2fdbf0d

update, bugfix output parameter error

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Update README.md

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Update README.md

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Update README.md

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added yaml file for conda enviroment

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Update README.md

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Update README.md

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added nextflow configuration files

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added parameter to config files

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update config file

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adding dependencies needed for call_peak.py

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added enviroment parameter

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Merge branch 'dev' of https://github.molgen.mpg.de/loosolab/masterJLU…

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…2018 into dev

Merge branch 'peak_calling' into dev

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Merge branch 'dev' of https://github.molgen.mpg.de/loosolab/masterJLU…

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…2018 into dev

removed redundant parameter

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added conda; bed input

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added parameter to pipeline

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Update README.md

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Update README.md

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delete unused logger statements

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overlap_with_known_TFBS: input/output changes

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add bed sequence reduction script

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add cdhit wrapper script

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Inital commit ! -> Migration to new project

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renewiegandt and others added 29 commits December 14, 2018 18:38

minor changes

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Update README.md

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Update README.md

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Update README.md

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Update pipeline.nf

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Update pipeline.nf

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Update README.md

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Update pipeline.nf

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Update pipeline.nf

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Merge branch 'master' into dev

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Merge pull request #5 from loosolab/dev

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Dev

rename call_peaks to footrptins_extraction

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Merge pull request #6 from loosolab/master

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master to dev

minor fixes

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Merge pull request #7 from loosolab/dev

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Dev

Update README.md

6954ecd

Update README.md

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Update pipeline.nf

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added parameter help

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added separate motif_estimation script

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Update pipeline.nf

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Update README.md

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documentation

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Merge branch 'master' of https://github.molgen.mpg.de/loosolab/master…

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…JLU2018

Changes output path for create_gtf

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added complete info text

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bug fix

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Merge pull request #8 from loosolab/master

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merge master to dev

$workdir/merged.bed -> "$workdir"/merged.bed

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renewiegandt merged commit 4ec60f7 into peak_calling Dec 19, 2018

Dev #13

Dev #13

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renewiegandt commented Dec 19, 2018